Developing Statistical Software in Fortran 95 Pref

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详细说明： Preface v
1 Motivation 1
1.1 WhyWeWrote This Book . . . . . . . . . . . . . . . . . . . 1
1.2 ForWhomWe AreWriting . . . . . . . . . . . . . . . . . . 2
1.2.1 Those Accustomed to Fortran 77 . . . . . . . . . . 2
1.2.2 Those Who Want to Create Windows Applications . 2
1.2.3 Those Who Want to Interface Fortran with Other
Applications . . . . . . . . . . . . . . . . . . . . . . 3
1.3 The Need for Good Programming Practice . . . . . . . . . . 4
1.3.1 Pr ogramming for Research Dissemination . . . . . . 4
1.3.2 Programming Standards . . . . . . . . . . . . . . . . 4
1.3.3 Benefits of Good Programming Style . . . . . . . . . 5
1.3.4 Benefits of Uniformity . . . . . . . . . . . . . . . . . 5
1.4 WhyWe Use Fortran . . . . . . . . . . . . . . . . . . . . . . 6
1.4.1 History of Fortran . . . . . . . . . . . . . . . . . . . 6
1.4.2 Fortran’s Advantages . . . . . . . . . . . . . . . . . 6
1.4.3 Useful New Features . . . . . . . . . . . . . . . . . . 7
1.4.4 What this book does not cover . . . . . . . . . . . . 7
1.4.5 Differences Between Fortran 90 and Fortran 95 . . . 7
1.4.6 Pseudo Object-Oriented Programming in Fortran . . 8
1.4.7 Fortran 2003 . . . . . . . . . . . . . . . . . . . . . . 8
1.4.8 Which Compiler Should I Use? . . . . . . . . . . . . 8
1.5 Developing Applications for a Broad Audience . . . . . . . 9
x Contents
1.5.1 Console Applications and COMServers . . . . . . . 9
1.5.2 COMServers and Clients . . . . . . . . . . . . . . . 10
1.6 Scope of the Rest of This Book . . . . . . . . . . . . . . . . 11
1.7 Our Source Code andWeb Site . . . . . . . . . . . . . . . . 12
2 Introduction to Modern Fortran 13
2.1 Getting Started . . . . . . . . . . . . . . . . . . . . . . . . . 13
2.1.1 A Very Simple Program . . . . . . . . . . . . . . . . 13
2.1.2 Fixed and Free-Form Source Code . . . . . . . . . . 15
2.1.3 Compiling, Linking and Running . . . . . . . . . . . 15
2.1.4 Compiler Options . . . . . . . . . . . . . . . . . . . 17
2.1.5 Standard Input and Output . . . . . . . . . . . . . . 19
2.1.6 Intrinsic Uniform Generator . . . . . . . . . . . . . . 20
2.1.7 Integer and Real Kinds . . . . . . . . . . . . . . . . 20
2.1.8 Do, if, case, goto . . . . . . . . . . . . . . . . . . . . 22
2.1.9 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 25
2.2 Arrays . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 26
2.2.1 Rank, Size and Shape . . . . . . . . . . . . . . . . . 26
2.2.2 Array Functions . . . . . . . . . . . . . . . . . . . . 27
2.2.3 Operations on Arrays and Array Sections . . . . . . 28
2.2.4 YourMileageMay Vary . . . . . . . . . . . . . . . . 29
2.2.5 Array Allocation . . . . . . . . . . . . . . . . . . . . 30
2.2.6 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 31
2.3 Basic Procedures . . . . . . . . . . . . . . . . . . . . . . . . 32
2.3.1 Subroutines . . . . . . . . . . . . . . . . . . . . . . . 32
2.3.2 Assumed-Shape and Optional Arguments . . . . . . 33
2.3.3 Functions . . . . . . . . . . . . . . . . . . . . . . . . 36
2.3.4 Pure, Elemental and Recursive Procedures . . . . . 38
2.3.5 On the Behavior of Local Variables . . . . . . . . . . 39
2.3.6 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 41
2.4 Manipulating Character Strings . . . . . . . . . . . . . . . . 42
2.4.1 Character Variables . . . . . . . . . . . . . . . . . . 42
2.4.2 Assigning, Comparing, and Concatenating Strings . 43
2.4.3 More String Functions . . . . . . . . . . . . . . . . . 44
2.4.4 Internal Files . . . . . . . . . . . . . . . . . . . . . . 45
2.4.5 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 46
2.5 Additional Topics . . . . . . . . . . . . . . . . . . . . . . . . 47
2.5.1 Expressions with Mixed Types and Kinds . . . . . . 47
2.5.2 Explicit Type Conversion . . . . . . . . . . . . . . . 48
2.5.3 Generic Procedures . . . . . . . . . . . . . . . . . . . 49
2.5.4 Don’t Pause or Stop . . . . . . . . . . . . . . . . . . 50
2.6 Additional Exercises . . . . . . . . . . . . . . . . . . . . . . 50
3 A Pseudo Object-Oriented Style 55
3.1 Basic Concepts of Object-Oriented Programming . . . . . . 56
Contents xi
3.1.1 Objects and Classes . . . . . . . . . . . . . . . . . . 56
3.1.2 Properties . . . . . . . . . . . . . . . . . . . . . . . . 56
3.1.3 Put and Get . . . . . . . . . . . . . . . . . . . . . . 57
3.1.4 Methods and Constructors . . . . . . . . . . . . . . 57
3.1.5 Conceptualizing an Interface . . . . . . . . . . . . . 58
3.1.6 Other Object-Oriented Concepts . . . . . . . . . . . 60
3.1.7 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 60
3.2 Modules . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 61
3.2.1 What Is aModule? . . . . . . . . . . . . . . . . . . . 61
3.2.2 How Not to UseModules . . . . . . . . . . . . . . . 62
3.2.3 How to UseModules . . . . . . . . . . . . . . . . . . 64
3.2.4 GenericModule Procedures . . . . . . . . . . . . . . 65
3.2.5 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 66
3.3 Derived Types . . . . . . . . . . . . . . . . . . . . . . . . . 67
3.3.1 What Is a Derived Type? . . . . . . . . . . . . . . . 67
3.3.2 Using Derived Types . . . . . . . . . . . . . . . . . . 69
3.3.3 Constructors and Default Initialization . . . . . . . . 71
3.3.4 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 73
3.4 Pointers . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73
3.4.1 Fear Not the Pointer . . . . . . . . . . . . . . . . . . 73
3.4.2 Pointer Assignment . . . . . . . . . . . . . . . . . . 74
3.4.3 Pointer Status . . . . . . . . . . . . . . . . . . . . . 76
3.4.4 Pointer Allocation . . . . . . . . . . . . . . . . . . . 77
3.4.5 Pointer Deallocation . . . . . . . . . . . . . . . . . . 77
3.4.6 Memory Leaks . . . . . . . . . . . . . . . . . . . . . 78
3.4.7 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 79
3.5 WhyWe Need Pointers . . . . . . . . . . . . . . . . . . . . 79
3.5.1 Pointers in Derived Types . . . . . . . . . . . . . . . 79
3.5.2 Pointers as Dummy Arguments . . . . . . . . . . . . 80
3.5.3 Recursive Data Structures . . . . . . . . . . . . . . . 82
3.5.4 Procedures for Linked Lists . . . . . . . . . . . . . . 83
3.5.5 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 86
3.6 ExampleModule: A Generic Error Handler . . . . . . . . . 88
3.6.1 Strategy forManaging Run-Time Errors . . . . . . . 88
3.6.2 Structure of theModule . . . . . . . . . . . . . . . . 89
3.6.3 Module Procedures . . . . . . . . . . . . . . . . . . . 91
3.6.4 Using theModule . . . . . . . . . . . . . . . . . . . 96
3.6.5 General Guidelines forModules . . . . . . . . . . . . 99
3.7 Additional Exercises . . . . . . . . . . . . . . . . . . . . . . 100
4 Implementing Computational Routines 101
4.1 Issues of Numerical Accuracy . . . . . . . . . . . . . . . . . 101
4.1.1 Accuracy Is Crucial . . . . . . . . . . . . . . . . . . 101
4.1.2 Floating-Point Approximation . . . . . . . . . . . . 102
4.1.3 Roundoff and Cancellation Error . . . . . . . . . . . 103
xii Contents
4.1.4 Arithmetic Exceptions . . . . . . . . . . . . . . . . . 104
4.1.5 Resources for Numerical Programming . . . . . . . . 106
4.1.6 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 106
4.2 Example: Fitting a Simple FiniteMixture . . . . . . . . . . 109
4.2.1 The Problem . . . . . . . . . . . . . . . . . . . . . . 109
4.2.2 Programming Constants . . . . . . . . . . . . . . . . 110
4.2.3 A Computational Engine Module . . . . . . . . . . . 111
4.2.4 A Public ProcedureWith Safeguards . . . . . . . . . 112
4.2.5 The Computations . . . . . . . . . . . . . . . . . . . 114
4.2.6 Strategies for Calling the Engine . . . . . . . . . . . 115
4.2.7 A Simple Calling Program . . . . . . . . . . . . . . . 116
4.2.8 Test, and Test Again . . . . . . . . . . . . . . . . . . 118
4.2.9 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 119
4.3 Efficient Routines at Lower Levels . . . . . . . . . . . . . . 120
4.3.1 What Is a Lower-Level Procedure? . . . . . . . . . . 120
4.3.2 Keeping Overhead Low . . . . . . . . . . . . . . . . 121
4.3.3 Taking Advantage of Structure . . . . . . . . . . . . 122
4.3.4 Loop Reordering, Stride and Saxpy . . . . . . . . . . 123
4.3.5 Optimization, Pipelining and Multiple Processors . . 125
4.3.6 A Simple Example . . . . . . . . . . . . . . . . . . . 126
4.3.7 Hidden Allocation of Temporary Arrays . . . . . . . 127
4.3.8 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 128
4.4 More Computational Procedure Examples . . . . . . . . . . 128
4.4.1 An Improved Cholesky Factorization . . . . . . . . . 128
4.4.2 Inverting a Symmetric Positive-Definite Matrix . . . 130
4.4.3 Weighted Least Squares . . . . . . . . . . . . . . . . 132
4.4.4 Computational Routines in Object-Oriented Programming
. . . . . . . . . . . . . . . . . . . . . . . . . . . 134
4.5 Additional Exercises . . . . . . . . . . . . . . . . . . . . . . 136
5 Developing a Console Application 139
5.1 A Program for Logistic Regression . . . . . . . . . . . . . . 140
5.1.1 The logistic regression model . . . . . . . . . . . . . 140
5.1.2 Motivation for the ELOGIT Console Program. . . . 140
5.1.3 DependencyMap for Source Components . . . . . . 140
5.1.4 Developing Program Units Incrementally . . . . . . 141
5.2 Where to Begin . . . . . . . . . . . . . . . . . . . . . . . . . 142
5.2.1 Before You Start . . . . . . . . . . . . . . . . . . . . 142
5.2.2 ProgramConstants . . . . . . . . . . . . . . . . . . . 143
5.2.3 The Control File Interface . . . . . . . . . . . . . . . 144
5.2.4 First Snapshot of ELOGIT . . . . . . . . . . . . . . 148
5.2.5 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 150
5.3 Starting theMain TypesModule . . . . . . . . . . . . . . . 151
5.3.1 An Object-Oriented Design . . . . . . . . . . . . . . 151
5.3.2 Storing the Dataset . . . . . . . . . . . . . . . . . . 152
Contents xiii
5.3.3 AModule for Pointer Allocation . . . . . . . . . . . 156
5.3.4 Putting and Getting Data . . . . . . . . . . . . . . . 158
5.3.5 Reading Data from Files . . . . . . . . . . . . . . . . 163
5.3.6 Second Snapshot of ELOGIT . . . . . . . . . . . . . 165
5.3.7 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 167
5.4 Specifying theModel . . . . . . . . . . . . . . . . . . . . . . 167
5.4.1 Storing theModel Specification . . . . . . . . . . . . 167
5.4.2 Putting and GettingModel Properties . . . . . . . . 168
5.4.3 Third Snapshot . . . . . . . . . . . . . . . . . . . . . 172
5.4.4 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 175
5.5 Fitting theModel . . . . . . . . . . . . . . . . . . . . . . . . 176
5.5.1 The Computational Task . . . . . . . . . . . . . . . 176
5.5.2 Newton-Raphson and Weighted Least Squares . . . 176
5.5.3 Parameters and Results . . . . . . . . . . . . . . . . 178
5.5.4 TheModel-Fitting Procedure . . . . . . . . . . . . . 179
5.5.5 Reporting the Results . . . . . . . . . . . . . . . . . 183
5.5.6 Looking Ahead . . . . . . . . . . . . . . . . . . . . . 188
5.6 Additional Exercises . . . . . . . . . . . . . . . . . . . . . . 188
6 Creating and Using Dynamic-Link Libraries 191
6.1 Extending the Functionality of Statistical Packages with Fortran
DLLs . . . . . . . . . . . . . . . . . . . . . . . . . . . . 191
6.1.1 Compiled Procedures Run Faster . . . . . . . . . . . 191
6.1.2 When to Use a DLL . . . . . . . . . . . . . . . . . . 192
6.2 Understanding Libraries . . . . . . . . . . . . . . . . . . . . 193
6.2.1 Source-Code Libraries . . . . . . . . . . . . . . . . . 193
6.2.2 Static Libraries . . . . . . . . . . . . . . . . . . . . . 194
6.2.3 Dynamic-Link Libraries . . . . . . . . . . . . . . . . 194
6.3 How Programs Use DLLs . . . . . . . . . . . . . . . . . . . 195
6.3.1 Locating the DLL . . . . . . . . . . . . . . . . . . . 195
6.3.2 DLL Hell . . . . . . . . . . . . . . . . . . . . . . . . 196
6.3.3 Dynamic Loading and Linking . . . . . . . . . . . . 196
6.3.4 Load-Time and Run-Time Linking . . . . . . . . . . 197
6.4 Creating a Fortran DLL . . . . . . . . . . . . . . . . . . . . 198
6.4.1 The Basic Steps . . . . . . . . . . . . . . . . . . . . 198
6.4.2 Passing Arguments . . . . . . . . . . . . . . . . . . . 198
6.4.3 Calling Conventions . . . . . . . . . . . . . . . . . . 199
6.4.4 Compiling and Linking the Source Code . . . . . . . 201
6.4.5 Compiler Options . . . . . . . . . . . . . . . . . . . 202
6.5 Example: a Fortran DLL for Fitting an Exponential Mixture 202
6.5.1 Creating aWrapper . . . . . . . . . . . . . . . . . . 202
6.5.2 Building the DLL with Intel Visual Fortran and Lahey/
Fujitsu Fortran . . . . . . . . . . . . . . . . . . 207
6.5.3 Building with Salford Fortran . . . . . . . . . . . . . 209
6.5.4 Calling the DLL Procedure from S-PLUS and R . . 211
xiv Contents
6.5.5 Calling the Function from SAS/IML . . . . . . . . . 214
6.6 Shared Objects in Unix and Linux . . . . . . . . . . . . . . 216
6.6.1 An Example: Extending S-Plus and R via a Fortran
Shared Object in Linux . . . . . . . . . . . . . . . . 217
7 Creating COM Servers 219
7.1 A Simple Example . . . . . . . . . . . . . . . . . . . . . . . 220
7.1.1 Themagic8 FortranModule . . . . . . . . . . . . . . 220
7.1.2 TheMagic8 COMServer . . . . . . . . . . . . . . . 222
7.1.3 Installing the Magic8 COM Server . . . . . . . . . . 222
7.1.4 The 8-Ball Speaks in Excel . . . . . . . . . . . . . . 223
7.1.5 The 8-Ball Speaks in S-PLUS and R . . . . . . . . . 225
7.1.6 The 8-Ball Speaks inMATLAB . . . . . . . . . . . . 226
7.1.7 The 8-Ball Speaks in SAS . . . . . . . . . . . . . . . 227
7.1.8 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 228
7.2 COMServer Basics . . . . . . . . . . . . . . . . . . . . . . . 228
7.2.1 References on COM . . . . . . . . . . . . . . . . . . 228
7.2.2 COM,Windows, and .NET . . . . . . . . . . . . . . 228
7.2.3 COM Servers versus Conventional DLLs . . . . . . . 229
7.2.4 The Object-Oriented Contract . . . . . . . . . . . . 230
7.2.5 In-Process versus Out-of-Process Servers . . . . . . . 231
7.3 Example: A COM Server for Logistic Regression . . . . . . 233
7.3.1 Producing COM Servers with Intel Visual Fortran . 233
7.3.2 Getting Ready . . . . . . . . . . . . . . . . . . . . . 233
7.3.3 Naming the Server and the Class . . . . . . . . . . . 234
7.3.4 Fortran Style Conventions . . . . . . . . . . . . . . . 235
7.3.5 Automatically Generating the COM Server Code . . 236
7.3.6 Building the Project in Visual Studio . . . . . . . . 237
7.3.7 Building and registering the server . . . . . . . . . . 243
7.3.8 Creating a Simple Client . . . . . . . . . . . . . . . . 245
7.4 Exercises . . . . . . . . . . . . . . . . . . . . . . . . . . . . 248
7.5 How the Fortran COMServerWorks . . . . . . . . . . . . . 249
7.5.1 Overview of the Automatically Generated Code . . . 249
7.5.2 The Interface Definition Language File . . . . . . . . 250
7.5.3 The Instance Code . . . . . . . . . . . . . . . . . . . 250
7.5.4 The Interface Code . . . . . . . . . . . . . . . . . . . 253
7.5.5 Passing Arrays as Variants . . . . . . . . . . . . . . 255
7.5.6 How the COMServer Handles Errors . . . . . . . . 259
7.6 Distributing and Installing COM Servers . . . . . . . . . . . 260
7.7 Additional Exercises . . . . . . . . . . . . . . . . . . . . . . 262
8 Creating COM Clients 265
8.1 An Improved Client for Excel . . . . . . . . . . . . . . . . . 265
8.1.1 Excel As a Graphical User Interface . . . . . . . . . 265
8.1.2 Starting toWrite the Client . . . . . . . . . . . . . . 266
Contents xv
8.1.3 How Did ItWork? . . . . . . . . . . . . . . . . . . . 269
8.1.4 Debugging the Client and Server . . . . . . . . . . . 270
8.1.5 Finishing the Excel Client . . . . . . . . . . . . . . . 274
8.1.6 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 277
8.2 Clients for Other Environments . . . . . . . . . . . . . . . . 277
8.2.1 Keeping It Simple . . . . . . . . . . . . . . . . . . . 277
8.2.2 Clients for S-PLUS and R . . . . . . . . . . . . . . . 277
8.2.3 A Client for SAS . . . . . . . . . . . . . . . . . . . . 281
8.2.4 SPSS . . . . . . . . . . . . . . . . . . . . . . . . . . 288
8.2.5 MATLAB . . . . . . . . . . . . . . . . . . . . . . . . 293
8.3 Creating a Standalone GUI Application . . . . . . . . . . . 296
8.3.1 Component-Based Design . . . . . . . . . . . . . . . 296
8.3.2 Visual Basic .NET . . . . . . . . . . . . . . . . . . . 296
8.3.3 An XML Data Format . . . . . . . . . . . . . . . . . 296
8.3.4 Starting the Graphical Interface . . . . . . . . . . . 298
8.3.5 Reading the Data File . . . . . . . . . . . . . . . . . 299
8.3.6 Specifying theModel . . . . . . . . . . . . . . . . . . 301
8.3.7 Invoking theModel Fit Procedure . . . . . . . . . . 304
8.3.8 Displaying the Results . . . . . . . . . . . . . . . . . 308
8.3.9 Finishing Up . . . . . . . . . . . . . . . . . . . . . . 312
8.3.10 Exercises . . . . . . . . . . . . . . . . . . . . . . . . 312
References 315 ...展开收缩